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SRX19225484: Whole genome sequencing of Arabidopsis cebennensis
1 ILLUMINA (Illumina HiSeq X) run: 26.1M spots, 7.9G bases, 2.6Gb downloads

Design: DNA extracted by CTAB protocol and library prepared by LITE protocol with Nextera kit
Submitted by: Charles University Faculty of Science
Study: Whole genome re-sequencing of ploidy variable and outcrossing Arabidopsis species reveals trajectories of adaptation to whole genome duplication and alteration of selection efficiency between different cytotypes.
show Abstracthide Abstract
The project focused on naturally occurring populations of several Arabidopsis species with the main goal of understanding how whole-genome duplication modulates evolutionary trajectories. The first objective was to understand how species adapt to whole-genome duplication, as an event that leads to severe physiological constraints. The second objective was to understand whether whole-genome duplication also confers a systematic advantage, e.g. when polyploids accumulate more genetic variation due to polysomic masking, and whether this variation facilitates adaptation. The third objective was to understand the evolutionary history of the focal species A. arenosa, A. lyrata, A. halleri, A. croatica and A. cebennensis.
Sample: AC13c
SAMN32969099 • SRS16631769 • All experiments • All runs
Library:
Name: CTF_02dn
Instrument: Illumina HiSeq X
Strategy: WGS
Source: GENOMIC
Selection: RANDOM PCR
Layout: PAIRED
Runs: 1 run, 26.1M spots, 7.9G bases, 2.6Gb
Run# of Spots# of BasesSizePublished
SRR2328198726,103,6647.9G2.6Gb2024-02-24

ID:
26429315

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